Basic Information
Locus ID:
gene-LOC108511277
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 22245065 | 22246343 | - | gene-LOC108511277 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 25,571.74 Da | 69.58 | 77.47 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 100 | 142 | 8.30987E-21 | - |
| Pfam | PF13639 | Ring finger domain | 99 | 142 | 4.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 77 | 148 | 4.54E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 148 | 7.8E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 100 | 141 | 9.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 100 | 142 | 12.371254 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 233 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017697985.1 | RING-H2 finger protein ATL80-like [Phoenix dactylifera] | 0 |
| Q84W40 | RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8B7MTR1 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC108511277 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag11G04249 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC108511277 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G16326 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016119 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.283 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12640 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.177 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18967 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11790 |
| Salicaceae | Populus euphratica | 1 | populus_peu02165 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643884 |
| Solanaceae | Solanum chilense | 1 | SOLCI001724800 |