Basic Information
Locus ID:
gene-LOC107032664
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
UBC4
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5150104 | 5151304 | + | gene-LOC107032664 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 17,223.83 Da | 34.96 | 101.97 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 36 | 134 | 4.06667E-32 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 22 | 134 | 3.7E-26 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 34 | 138 | 2.17E-30 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 14 | 146 | 2.2E-31 | IPR016135 |
| SMART | SM00212 | ubc_7 | 1 | 141 | 2.6E-20 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 141 | 27.367245 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 66 | 82 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41340.2 | - | 0 |
| RefSeq | XP_015089730.1 | ubiquitin-conjugating enzyme E2 4-like [Solanum pennellii] | 0 |
| P42748 | Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana OX=3702 GN=UBC4 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology