Basic Information
Locus ID:
gene-LOC107032576
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 78676483 | 78678680 | + | gene-LOC107032576 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 34,749.84 Da | 44.42 | 73.66 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 52 | 90 | 3.85953E-10 | - |
| Pfam | PF03145 | Seven in absentia protein family | 96 | 294 | 3.8E-78 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 49 | 94 | 1.71E-5 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 107 | 298 | 3.27E-41 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 165 | 295 | 3.9E-32 | IPR008974 |
| Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 143 | 164 | 2.9E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 142 | 2.4E-8 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 107 | 167 | 14.202578 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 54 | 90 | 8.948558 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_015089663.1 | E3 ubiquitin-protein ligase SINAT2-like [Solanum pennellii] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology