Basic Information
Locus ID:
gene-LOC107032428
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 5636559 | 5644126 | + | gene-LOC107032428 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 46,639.79 Da | 33.67 | 85.25 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 140 | 391 | 1.30625E-94 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 138 | 391 | 4.9E-58 | IPR001245 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 34 | 110 | 2.0E-11 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 23 | 112 | 3.66E-21 | IPR036770 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 137 | 391 | 6.34E-73 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 214 | 404 | 2.6E-52 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 13 | 130 | 1.0E-22 | IPR036770 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 131 | 213 | 1.3E-21 | - |
| SMART | SM00248 | ANK_2a | 88 | 118 | 1800.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 55 | 84 | 2.6E-6 | IPR002110 |
| PIRSF | PIRSF000654 | ILK | 8 | 404 | 2.6E-116 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 55 | 87 | 13.124308 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 134 | 398 | 44.838009 | IPR000719 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 55 | 87 | 14.5057 | IPR002110 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 140 | 161 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 248 | 266 | 1.2E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 362 | 384 | 1.2E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 317 | 339 | 1.2E-12 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 209 | 222 | 1.2E-12 | IPR001245 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18950.2 | - | 0 |
| RefSeq | XP_015089514.1 | integrin-linked protein kinase 1-like isoform X1 [Solanum pennellii] | 0 |
| Q93Z30 | Serine/threonine-protein kinase 12 OS=Arabidopsis thaliana OX=3702 GN=BHP PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29348 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30010930 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1310.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G14906 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6135, nbisL1-mrna-9505 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016722 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.488 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21756 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-7321, nbisL1-mrna-7322, nbisL1-mrna-7323 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.269 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017523 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19640 |
| Salicaceae | Populus euphratica | 1 | populus_peu31675 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610332 |
| Solanaceae | Solanum chilense | 1 | SOLCI005577300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032428 |