Basic Information
Locus ID:
gene-LOC107032257
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 2673550 | 2675462 | + | gene-LOC107032257 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 24,409.67 Da | 50.25 | 75.90 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 39 | 87 | 6.04094E-23 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 41 | 85 | 1.8E-10 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 98 | 7.07E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 25 | 99 | 7.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 41 | 85 | 1.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 41 | 86 | 13.035139 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 56 | 65 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03510.1 | RING membrane-anchor 1. RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity. | 0 |
| RefSeq | XP_015089326.1 | E3 ubiquitin-protein ligase RMA1H1 [Solanum pennellii] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology