Basic Information
Locus ID:
gene-LOC107032175
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 2681393 | 2682849 | + | gene-LOC107032175 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 21,207.95 Da | 51.49 | 76.02 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 30 | 82 | 9.99675E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 32 | 80 | 1.2E-6 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 27 | 93 | 4.57E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 131 | 1.6E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 32 | 80 | 2.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 32 | 81 | 12.149959 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 47 | 56 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28270.1 | RING membrane-anchor 2. Encodes a RING finger E3 ubiquitin ligase. Binds and ubiquitinates ABP1 in vivo and in vitro. | 0 |
| RefSeq | XP_015089244.1 | E3 ubiquitin-protein ligase RMA1H1-like [Solanum pennellii] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology