Basic Information
Locus ID:
gene-LOC107032162
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
BED zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 1855489 | 1858785 | + | gene-LOC107032162 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 35,148.71 Da | 65.40 | 75.73 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02892 | BED zinc finger | 63 | 106 | 2.9E-7 | IPR003656 |
| SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 63 | 108 | 1.43E-5 | IPR036236 |
| SMART | SM00614 | bed5 | 60 | 114 | 3.7E-14 | - |
| ProSiteProfiles | PS50808 | Zinc finger BED-type profile. | 60 | 125 | 11.726974 | IPR003656 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015089228.1 | uncharacterized protein LOC107032162 [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24259 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24363 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah001568, Ah021035 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00009261 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21155 |
| Poaceae | Triticum aestivum | 1 | TraesCS6D02G013700.1 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132629007 |
| Solanaceae | Solanum chilense | 1 | SOLCI004251100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032162 |