Basic Information
Locus ID:
gene-LOC107032159
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
LHP1
Description:
Chromo domain protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 16128063 | 16133701 | - | gene-LOC107032159 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 58,503.30 Da | 42.95 | 75.59 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00024 | CD_CSD | 62 | 111 | 1.06535E-19 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 62 | 110 | 1.1E-12 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 53 | 119 | 5.79E-18 | IPR016197 |
| Gene3D | G3DSA:2.40.50.40 | - | 42 | 123 | 2.4E-20 | - |
| SMART | SM00300 | ChS_2 | 462 | 536 | 1.0E-7 | IPR008251 |
| SMART | SM00298 | chromo_7 | 61 | 114 | 1.3E-13 | IPR000953 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 62 | 121 | 17.046301 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 79 | 99 | - | IPR023779 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 143 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17690.2 | - | 0 |
| RefSeq | XP_015089224.1 | chromo domain protein LHP1-like [Solanum pennellii] | 0 |
| Q944N1 | Chromo domain protein LHP1 OS=Solanum lycopersicum OX=4081 GN=LHP1 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Solanum chilense | 1 | SOLCI003734000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032159 |