Basic Information
Locus ID:
gene-LOC107032099
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
PDC3
Description:
Thiamine pyrophosphate enzyme, central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 76110349 | 76113408 | - | gene-LOC107032099 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 65,337.93 Da | 29.69 | 89.27 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 404 | 586 | 1.32632E-86 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 45 | 206 | 2.19222E-92 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 42 | 209 | 6.5E-37 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 239 | 356 | 1.1E-21 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 449 | 574 | 3.2E-14 | IPR011766 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 42 | 217 | 4.13E-46 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 406 | 598 | 5.0E-41 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 228 | 382 | 8.07E-34 | IPR029035 |
| Gene3D | G3DSA:3.40.50.970 | - | 398 | 585 | 1.8E-55 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 229 | 391 | 7.1E-43 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 39 | 214 | 1.4E-62 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 37 | 598 | 2.0E-210 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_015089163.1 | pyruvate decarboxylase 1 [Solanum pennellii] | 0 |
| O82647 | Pyruvate decarboxylase 1 OS=Arabidopsis thaliana OX=3702 GN=PDC1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology