Basic Information
Locus ID:
gene-LOC107032085
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 3643824 | 3658575 | + | gene-LOC107032085 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 38,133.05 Da | 46.57 | 74.55 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 188 | 316 | 4.18912E-66 | - |
| CDD | cd16571 | RING-HC_SIAHs | 53 | 110 | 8.91131E-11 | - |
| Pfam | PF03145 | Seven in absentia protein family | 116 | 315 | 1.1E-79 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 127 | 318 | 1.83E-50 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 186 | 315 | 7.3E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 127 | 182 | 1.2E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 126 | 8.2E-6 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 127 | 187 | 14.339098 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 55 | 110 | 8.815781 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_027767835.1 | E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Solanum pennellii] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology