Basic Information
Locus ID:
gene-LOC107032069
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
protein modification by small protein conjugation or removal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 63265053 | 63266014 | + | gene-LOC107032069 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 31,906.20 Da | 39.90 | 87.58 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 231 | 274 | 3.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 225 | 277 | 2.16E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 196 | 277 | 9.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 232 | 273 | 1.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 232 | 274 | 12.946621 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15530.6 | - | 0 |
| RefSeq | XP_015089120.2 | probable E3 ubiquitin-protein ligase ZFP1 [Solanum pennellii] | 0 |
| Q9ZQF9 | E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana OX=3702 GN=MBR1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 4 | gene-LOC132608083, gene-LOC132608086, gene-LOC132608267 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI006504300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032069 |