Basic Information
Locus ID:
gene-LOC107031909
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 97266727 | 97268403 | - | gene-LOC107031909 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 42,328.08 Da | 48.96 | 84.80 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 323 | 366 | 2.8825E-14 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 23 | 92 | 1.4E-16 | IPR025287 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 149 | 226 | 7.1E-8 | IPR032872 |
| Pfam | PF13639 | Ring finger domain | 323 | 366 | 1.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 319 | 369 | 1.36E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 287 | 371 | 2.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 324 | 365 | 3.3E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 324 | 366 | 12.120453 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015088904.1 | putative RING-H2 finger protein ATL21A [Solanum pennellii] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology