Basic Information
Locus ID:
gene-LOC107031691
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase UPL4 isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 946704 | 957661 | + | gene-LOC107031691 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 173,002.03 Da | 48.91 | 91.61 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1157 | 1550 | 1.42623E-112 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1204 | 1552 | 3.9E-78 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1152 | 1545 | 3.14E-90 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 82 | 507 | 9.4E-33 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1102 | 1324 | 4.9E-37 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1436 | 1550 | 6.7E-33 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 85 | 529 | 3.4E-43 | IPR011989 |
| SMART | SM00119 | hect_3 | 1169 | 1552 | 1.3E-92 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1171 | 1552 | 60.970066 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 813 | 855 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 828 | 855 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 44 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_015088624.1 | E3 ubiquitin-protein ligase UPL4 [Solanum pennellii] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology