halophFGD

Basic Information

Locus ID: gene-LOC107031537

Species & Taxonomic ID: Solanum pennellii & 28526

Genome Assembly: GCF_001406875.1

Description: WD domain, G-beta repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	83821411	83828364	-	gene-LOC107031537

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.95	49,867.11 Da	39.05	75.52	-0.44

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	303	340	1.1E-5	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	190	420	6.41E-35	IPR036322
Gene3D	G3DSA:2.130.10.10	-	215	436	1.2E-29	IPR015943
SMART	SM00320	WD40_4	344	383	2.2	IPR001680
SMART	SM00320	WD40_4	301	340	1.2E-8	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	308	343	10.864685	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	308	349	13.482671	IPR001680

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G56190.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_015088435.1	uncharacterized WD repeat-containing protein C2A9.03-like [Solanum pennellii]
Swiss-Prot	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC2A9.03 PE=4 SV=2

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	12	jg10836, jg10837, jg11376, jg20534, jg20609, jg21661, jg5898 ... jg21745, jg22624, jg24654, jg24721, jg6105
Aizoaceae	Mesembryanthemum crystallinum	3	gene_23309, gene_4765, gene_7090
Amaranthaceae	Atriplex hortensis	5	Ah018123, Ah018124, Ah018127, Ah022394, Ah023957
Amaranthaceae	Beta vulgaris	2	BVRB_1g009510, BVRB_3g064690
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg18617, Sbi_jg29266, Sbi_jg3499, Sbi_jg37044 ... Sbi_jg59038, Sbi_jg63587
Amaranthaceae	Salicornia europaea	3	Seu_jg23298, Seu_jg4883, Seu_jg6455
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00012857, GOSA_00022040
Amaranthaceae	Suaeda glauca	6	Sgl02455, Sgl07608, Sgl11746, Sgl11909, Sgl17235, Sgl17313
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000009618, gene:ENSEOMG00000011900 ... gene:ENSEOMG00000012876, gene:ENSEOMG00000013764, gene:ENSEOMG00000014274, gene:ENSEOMG00000028741, gene:ENSEOMG00000029274, gene:ENSEOMG00000031790, gene:ENSEOMG00000035117, gene:ENSEOMG00000040337, gene:ENSEOMG00000044201, gene:ENSEOMG00000046391, gene:ENSEOMG00000047536
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.1AG0012210, CQ.Regalona.r1.1BG0013880 ... CQ.Regalona.r1.2BG0000060, CQ.Regalona.r1.3AG0024500, CQ.Regalona.r1.3BG0025380, CQ.Regalona.r1.4BG0026790, CQ.Regalona.r1.4BG0026800
Anacardiaceae	Pistacia vera	5	pistato.v30040750, pistato.v30056850, pistato.v30065670 ... pistato.v30066420, pistato.v30150880
Apiaceae	Apium graveolens	4	Ag2G02317, Ag3G02410, Ag4G02728, Ag9G00655
Arecaceae	Cocos nucifera	8	COCNU_01G006890, COCNU_01G012910, COCNU_03G006740 ... COCNU_03G006850, COCNU_05G006130, contig69012168G000010, scaffold000257G000010, scaffold154227G000010
Arecaceae	Phoenix dactylifera	7	gene-LOC103696308, gene-LOC103710646, gene-LOC103711976 ... gene-LOC103717227, gene-LOC103718463, gene-LOC103720311, gene-LOC120105657
Asparagaceae	Asparagus officinalis	8	AsparagusV1_01.1725.V1.1, AsparagusV1_01.3490.V1.1 ... AsparagusV1_01.3506.V1.1, AsparagusV1_01.481.V1.1, AsparagusV1_02.900.V1.1, AsparagusV1_05.1053.V1.1, AsparagusV1_05.2618.V1.1, AsparagusV1_Unassigned.900.V1.1
Asteraceae	Flaveria trinervia	9	Ftri11G07675, Ftri11G18559, Ftri11G30431, Ftri12G22375 ... Ftri16G14787, Ftri16G21187, Ftri2G04637, Ftri2G08328, Ftri2G16678
Brassicaceae	Arabidopsis thaliana	5	AT1G36070.1, AT1G55680.1, AT1G78070.1, AT3G13340.1 ... AT5G56190.2
Brassicaceae	Eutrema salsugineum	4	Thhalv10011474m.g.v1.0, Thhalv10013539m.g.v1.0 ... Thhalv10018538m.g.v1.0, Thhalv10020726m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g41290.v2.2, Sp3g11540.v2.2, Sp5g33200.v2.2 ... Sp6g18040.v2.2, Sp7g24380.v2.2
Brassicaceae	Brassica nigra	11	BniB01g051850.2N, BniB01g051870.2N, BniB01g051890.2N ... BniB02g035020.2N, BniB03g012490.2N, BniB03g057330.2N, BniB04g053800.2N, BniB05g035860.2N, BniB06g025720.2N, BniB07g000750.2N, BniB07g026900.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq01G1569, Ceq01G1570, Ceq01G1571, Ceq07G0632, Ceq09G1950
Casuarinaceae	Casuarina glauca	5	Cgl01G1732, Cgl01G1733, Cgl01G1734, Cgl07G0630, Cgl09G2134
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno03g09260, gene.Cymno09g04910
Dunaliellaceae	Dunaliella salina	1	Dusal.0499s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	7	gene.Thate04g06720, gene.Thate04g20190, gene.Thate04g20210 ... gene.Thate04g27470, gene.Thate07g08290, gene.Thate07g08510, gene.Thate09g01110
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-1478, nbisL1-mrna-2507, nbisL1-mrna-4229
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG05.2122, evm.TU.LG06.1023, evm.TU.LG11.80
Plantaginaceae	Plantago ovata	10	Pov_00004315, Pov_00004318, Pov_00006140, Pov_00012434 ... Pov_00024352, Pov_00025222, Pov_00033762, Pov_00033766, Pov_00037328, Pov_00039177
Plumbaginaceae	Limonium bicolor	4	Lb1G03739, Lb1G03745, Lb2G12370, Lb3G19083
Poaceae	Echinochloa crus-galli	22	AH01.3446, AH03.3760, AH06.1237, AH06.404, AH07.3264 ... AH07.3266, AH08.1338, AH08.1944, BH01.3553, BH01.3802, BH03.4039, BH06.528, BH07.3088, BH07.3089, BH08.1540, BH08.2043, CH01.4054, CH03.4308, CH06.531, CH07.3157, CH08.1588, CH08.2215
Poaceae	Eleusine coracana subsp. coracana	13	gene-QOZ80_2AG0143770, gene-QOZ80_2BG0199140 ... gene-QOZ80_3AG0227650, gene-QOZ80_3AG0250410, gene-QOZ80_3BG0272980, gene-QOZ80_3BG0277740, gene-QOZ80_6AG0510470, gene-QOZ80_6BG0462580, gene-QOZ80_7AG0577990, gene-QOZ80_7BG0609300, gene-QOZ80_8AG0629580, gene-QOZ80_8AG0635890, gene-QOZ80_8BG0658370
Poaceae	Hordeum vulgare	12	HORVU.MOREX.r3.2HG0123470.1, HORVU.MOREX.r3.4HG0389310.1 ... HORVU.MOREX.r3.3HG0317710.1.CDS1, HORVU.MOREX.r3.5HG0537350.1.CDS1, HORVU.MOREX.r3.6HG0610680.1, HORVU.MOREX.r3.6HG0610720.1, HORVU.MOREX.r3.7HG0646990.1.CDS1, HORVU.MOREX.r3.7HG0656540.1, HORVU.MOREX.r3.7HG0674550.1, HORVU.MOREX.r3.7HG0677990.1, HORVU.MOREX.r3.7HG0694520.1, HORVU.MOREX.r3.7HG0749840.1.CDS1
Poaceae	Lolium multiflorum	7	gene-QYE76_018386, gene-QYE76_025271, gene-QYE76_028380 ... gene-QYE76_029837, gene-QYE76_031815, gene-QYE76_039545, gene-QYE76_067585
Poaceae	Oryza coarctata	11	Oco03G020120, Oco03G020130, Oco04G020860, Oco05G014890 ... Oco06G015280, Oco11G003320, Oco12G003330, Oco15G007950, Oco15G011770, Oco16G007680, Oco16G010810
Poaceae	Oryza sativa	5	LOC_Os02g48964.1, LOC_Os03g26870.1, LOC_Os06g07540.1 ... LOC_Os08g31560.1, LOC_Os08g38880.1
Poaceae	Paspalum vaginatum	7	gene-BS78_01G329900, gene-BS78_02G357200 ... gene-BS78_04G258000, gene-BS78_07G055800, gene-BS78_07G129800, gene-BS78_07G177500, gene-BS78_10G058800
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0102924, Pt_Chr0203564, Pt_Chr0203565, Pt_Chr0306380 ... Pt_Chr0402051, Pt_Chr0403216, Pt_Chr0404018, Pt_Chr0404412, Pt_Ctg00144
Poaceae	Sporobolus alterniflorus	18	Chr04G011550, Chr06G003480, Chr09G021430, Chr11G021920 ... Chr13G005690, Chr14G002540, Chr15G004900, Chr16G013820, Chr16G013900, Chr16G016530, Chr17G015940, Chr19G001880, Chr20G006540, Chr21G001680, Chr27G015340, Chr27G015350, Chr29G006190, Chr31G002970
Poaceae	Thinopyrum elongatum	11	Tel2E01G1016100, Tel2E01G319400, Tel4E01G372300 ... Tel6E01G354800, Tel6E01G520100, Tel6E01G520400, Tel7E01G253200, Tel7E01G402500, Tel7E01G425500, Telscf2001G000100, Telscf801G000100
Poaceae	Triticum dicoccoides	16	gene_TRIDC2AG020350, gene_TRIDC2BG024300 ... gene_TRIDC4AG012640, gene_TRIDC4BG037680, gene_TRIDC5AG015890, gene_TRIDC6AG043450, gene_TRIDC6AG043480, gene_TRIDC6BG051100, gene_TRIDC7AG015640, gene_TRIDC7AG028180, gene_TRIDC7AG030660, gene_TRIDC7AG040810, gene_TRIDC7BG005030, gene_TRIDC7BG019010, gene_TRIDC7BG021510, gene_TRIDC7BG029200
Poaceae	Triticum aestivum	24	TraesCS2A02G161400.3, TraesCS2B02G187400.1 ... TraesCS2D02G168500.3, TraesCS4A02G093000.1, TraesCS4B02G211500.2, TraesCS4D02G212100.1, TraesCS6A02G284400.2, TraesCS6A02G284600.1, TraesCS6B02G313100.2, TraesCS6B02G313300.1, TraesCS6D02G264800.2, TraesCS6D02G265000.1, TraesCS7A02G132700.1, TraesCS7A02G219400.1, TraesCS7A02G240100.1, TraesCS7A02G295100.1, TraesCS7B02G033300.1, TraesCS7B02G127900.1, TraesCS7B02G135700.1, TraesCS7B02G178000.1, TraesCS7D02G132200.1, TraesCS7D02G222700.1, TraesCS7D02G238100.1, TraesCS7D02G290100.1
Poaceae	Zea mays	8	Zm00001eb018700_P003, Zm00001eb033950_P004 ... Zm00001eb042230_P001, Zm00001eb189190_P003, Zm00001eb253050_P002, Zm00001eb281660_P005, Zm00001eb375380_P003, Zm00001eb381220_P005
Poaceae	Zoysia japonica	9	nbis-gene-16892, nbis-gene-21995, nbis-gene-33004 ... nbis-gene-34821, nbis-gene-45036, nbis-gene-5072, nbis-gene-52159, nbis-gene-54649, nbis-gene-8886
Poaceae	Zoysia macrostachya	8	Zma_g14297, Zma_g17047, Zma_g22971, Zma_g24046, Zma_g29182 ... Zma_g31431, Zma_g3527, Zma_g5595
Portulacaceae	Portulaca oleracea	6	evm.TU.LG04.1766, evm.TU.LG06.612, evm.TU.LG07.2018 ... evm.TU.LG13.1585, evm.TU.LG15.1123, evm.TU.LG21.1031
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g16660, gene.Posoc02g22610
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_2_RagTag.1535, evm.TU.Scaffold_7_RagTag.1015 ... evm.TU.Scaffold_7_RagTag.1406, evm.TU.Scaffold_8_RagTag.1686, evm.TU.Scaffold_8_RagTag.369, evm.TU.Scaffold_8_RagTag.718
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-18828, nbisL1-mrna-20086, nbisL1-mrna-20206 ... nbisL1-mrna-8573, nbisL1-mrna-8608, nbisL1-mrna-9522
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-13544, nbisL1-mrna-19184, nbisL1-mrna-19814 ... nbisL1-mrna-2314
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-13354, nbisL1-mrna-15017, nbisL1-mrna-18264 ... nbisL1-mrna-18265, nbisL1-mrna-6840
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000002l.245, evm.TU.utg000002l.769 ... evm.TU.utg000018l.536, evm.TU.utg000018l.7
Rhizophoraceae	Kandelia obovata	4	Maker00002766, Maker00003504, Maker00010331, Maker00011676
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-2974, nbisL1-mrna-8204, nbisL1-mrna-9057 ... nbisL1-mrna-9349
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-12092, nbisL1-mrna-20337, nbisL1-mrna-9927
Salicaceae	Populus euphratica	9	populus_peu00018, populus_peu10504, populus_peu14633 ... populus_peu16334, populus_peu17092, populus_peu27073, populus_peu27074, populus_peu30994, populus_peu32301
Solanaceae	Lycium barbarum	7	gene-LOC132604440, gene-LOC132609919, gene-LOC132617966 ... gene-LOC132617968, gene-LOC132627482, gene-LOC132627655, gene-LOC132636267
Solanaceae	Solanum chilense	6	SOLCI001555600, SOLCI002465100, SOLCI004291700 ... SOLCI005610600, SOLCI006216500, SOLCI007038400
Solanaceae	Solanum pennellii	7	gene-LOC107002455, gene-LOC107005238, gene-LOC107015520 ... gene-LOC107025331, gene-LOC107025623, gene-LOC107025624, gene-LOC107031537
Tamaricaceae	Reaumuria soongarica	4	STRG.20973_chr08_-, STRG.24564_chr08_-, gene_12385 ... gene_17908
Tamaricaceae	Tamarix chinensis	3	TC05G2518, TC06G0597, TC12G2058
Zosteraceae	Zostera marina	3	Zosma03g33780.v3.1, Zosma06g16260.v3.1, Zosma06g16340.v3.1