Basic Information
Locus ID:
gene-LOC107031454
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
receptor protein kinase TMK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 83243620 | 83247213 | - | gene-LOC107031454 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 101,277.48 Da | 40.12 | 86.87 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 589 | 862 | 2.77808E-92 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 322 | 360 | 0.0077 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 60 | 0.0024 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 383 | 424 | 4.6E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 586 | 855 | 4.3E-48 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 557 | 859 | 7.69E-79 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 38 | 434 | 1.59E-49 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 323 | 448 | 1.7E-30 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 544 | 660 | 2.1E-36 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 661 | 881 | 1.1E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 321 | 9.0E-67 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 87 | 109 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 411 | 433 | 63.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 184 | 207 | 9.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 387 | 410 | 72.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 110 | 133 | 4.7 | IPR003591 |
| SMART | SM00220 | serkin_6 | 583 | 863 | 4.1E-43 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 583 | 863 | 41.304508 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 589 | 611 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 708 | 720 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 910 | 932 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_015088328.1 | receptor-like kinase TMK4 [Solanum pennellii] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology