Basic Information
Locus ID:
gene-LOC107031387
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 80331327 | 80336867 | - | gene-LOC107031387 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 111,995.83 Da | 43.09 | 108.24 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 263 | 327 | 2.9E-12 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 348 | 628 | 1.38E-18 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 246 | 328 | 2.56E-19 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 554 | 957 | 1.78E-34 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 648 | 853 | 1.5E-27 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 3 | 121 | 1.2E-10 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 854 | 1009 | 5.6E-8 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 341 | 647 | 1.7E-18 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 261 | 332 | 1.8E-19 | IPR013083 |
| SMART | SM00185 | arm_5 | 874 | 914 | 190.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 714 | 756 | 410.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 262 | 325 | 1.0E-18 | IPR003613 |
| SMART | SM00185 | arm_5 | 575 | 617 | 5.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 757 | 798 | 23.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 801 | 841 | 24.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 672 | 712 | 19.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 258 | 332 | 20.019585 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 726 | 770 | 8.6624 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 586 | 630 | 9.0474 | IPR000225 |
| Coils | Coil | Coil | 125 | 152 | - | - |
| Coils | Coil | Coil | 67 | 87 | - | - |
| Coils | Coil | Coil | 195 | 215 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015088221.1 | U-box domain-containing protein 43-like [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5773 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30235850 |
| Apiaceae | Apium graveolens | 1 | Ag5G02549 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711617 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA05963 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0368 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0379 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.379 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1544 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2607 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6116 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.999 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012874 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6400 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2184 |
| Salicaceae | Populus euphratica | 1 | populus_peu21467 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609553 |
| Solanaceae | Solanum chilense | 1 | SOLCI003509000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031387 |