Basic Information
Locus ID:
gene-LOC107031384
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 22123298 | 22152618 | - | gene-LOC107031384 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 102,430.62 Da | 44.80 | 83.03 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 4 | 198 | 2.72503E-90 | - |
| CDD | cd18794 | SF2_C_RecQ | 199 | 334 | 2.0788E-53 | - |
| Pfam | PF00570 | HRDC domain | 549 | 615 | 4.5E-13 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 18 | 177 | 2.9E-21 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 218 | 324 | 2.4E-20 | IPR001650 |
| Pfam | PF14493 | Helix-turn-helix domain | 655 | 750 | 4.6E-19 | IPR029491 |
| Pfam | PF09382 | RQC domain | 403 | 500 | 4.6E-22 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 338 | 398 | 2.8E-10 | IPR032284 |
| SUPERFAMILY | SSF47819 | HRDC-like | 544 | 625 | 6.76E-17 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 55 | 339 | 3.08E-56 | IPR027417 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 397 | 502 | 2.18E-24 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 400 | 523 | 9.7E-34 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 544 | 625 | 5.2E-16 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 199 | 399 | 1.4E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 197 | 1.4E-73 | IPR027417 |
| SMART | SM00956 | RQC_2 | 406 | 515 | 3.7E-25 | IPR018982 |
| SMART | SM00490 | helicmild6 | 244 | 325 | 5.0E-27 | IPR001650 |
| SMART | SM00341 | hrdc7 | 545 | 625 | 0.0023 | IPR002121 |
| SMART | SM00487 | ultradead3 | 12 | 203 | 3.0E-32 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 6 | 457 | 3.8E-149 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 215 | 378 | 19.481808 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 545 | 625 | 17.946434 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 24 | 191 | 23.850946 | IPR014001 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_015088217.1 | uncharacterized protein LOC107031384 isoform X1 [Solanum pennellii] | 0 |
| Q9CL21 | ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain Pm70) OX=272843 GN=recQ PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology