Basic Information
Locus ID:
gene-LOC107031377
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 23644796 | 23661001 | + | gene-LOC107031377 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 105,034.43 Da | 48.08 | 82.67 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 757 | 910 | 2.22681E-58 | - |
| Pfam | PF06337 | DUSP domain | 24 | 129 | 3.0E-23 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 304 | 909 | 2.9E-87 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 302 | 912 | 9.03E-110 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 2 | 129 | 2.62E-26 | IPR035927 |
| Gene3D | G3DSA:3.30.2230.10 | - | 1 | 141 | 2.0E-36 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 291 | 527 | 1.0E-67 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 142 | 227 | 2.8E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 681 | 920 | 4.1E-57 | - |
| SMART | SM00695 | dusp | 20 | 131 | 2.9E-31 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 304 | 912 | 57.098083 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 1 | 128 | 17.972626 | IPR006615 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 854 | 871 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 305 | 320 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 291 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_015088207.1 | ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Solanum pennellii] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology