Basic Information
Locus ID:
gene-LOC107031289
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 68653872 | 68660866 | - | gene-LOC107031289 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 83,228.26 Da | 51.07 | 66.29 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 480 | 758 | 9.7167E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 516 | 550 | 1.8E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 1.9E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 557 | 593 | 0.18 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 640 | 675 | 0.023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 481 | 508 | 4.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 480 | 758 | 4.16E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 440 | 607 | 6.0E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 608 | 758 | 2.0E-28 | IPR015943 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0036 | IPR006594 |
| SMART | SM00320 | WD40_4 | 470 | 508 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 678 | 717 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 719 | 758 | 0.037 | IPR001680 |
| SMART | SM00320 | WD40_4 | 511 | 550 | 1.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 637 | 675 | 2.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 597 | 634 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 554 | 594 | 0.0032 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 483 | 517 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 518 | 553 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 726 | 758 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 726 | 758 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 561 | 603 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.24612 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 518 | 553 | 10.785595 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 644 | 684 | 8.737287 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 495 | 509 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 537 | 551 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 400 | - | - |
| Coils | Coil | Coil | 93 | 113 | - | - |
| Coils | Coil | Coil | 341 | 375 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_015088087.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Solanum pennellii] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology