Basic Information
Locus ID:
gene-LOC107031202
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 4095383 | 4103267 | - | gene-LOC107031202 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 40,253.81 Da | 47.82 | 77.53 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 284 | 326 | 8.35173E-15 | - |
| Pfam | PF13639 | Ring finger domain | 284 | 326 | 6.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 276 | 332 | 1.6E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 276 | 334 | 4.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 285 | 325 | 1.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 285 | 326 | 12.887609 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02750.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015087971.1 | uncharacterized protein LOC107031202 [Solanum pennellii] | 0 |
| Q6AXU4 | E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628771 |
| Solanaceae | Solanum chilense | 2 | SOLCI004618700, SOLCI004618800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031202 |