Basic Information
Locus ID:
gene-LOC107031124
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
EOL1
Description:
Tetratricopeptide repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 75122306 | 75128962 | + | gene-LOC107031124 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 100,479.80 Da | 52.64 | 93.42 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13374 | Tetratricopeptide repeat | 711 | 740 | 0.0028 | - |
| SUPERFAMILY | SSF48452 | TPR-like | 474 | 738 | 8.35E-13 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 333 | 503 | 2.36E-9 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 707 | 877 | 8.73E-16 | IPR011990 |
| SUPERFAMILY | SSF54695 | POZ domain | 180 | 276 | 1.41E-8 | IPR011333 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 786 | 885 | 1.8E-8 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 598 | 781 | 1.6E-14 | IPR011990 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 176 | 318 | 1.0E-15 | IPR011333 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 353 | 548 | 3.7E-10 | IPR011990 |
| SMART | SM00225 | BTB_4 | 179 | 279 | 0.0011 | IPR000210 |
| SMART | SM00028 | tpr_5 | 838 | 871 | 15.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 709 | 742 | 0.0085 | IPR019734 |
| SMART | SM00028 | tpr_5 | 380 | 413 | 11.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 509 | 542 | 230.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 601 | 634 | 450.0 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 709 | 742 | 8.5554 | IPR019734 |
| Coils | Coil | Coil | 389 | 409 | - | - |
| Coils | Coil | Coil | 761 | 781 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02680.1 | ETO1-like 1. Encodes a paralog of ETO1, which is a negative regulator of ACS5 (a key enzyme in ethylene biosynthesis pathway). EOL1 also interacts with and inhibits the activity of ACS5. | 0 |
| RefSeq | XP_015087844.1 | ETO1-like protein 1 [Solanum pennellii] | 0 |
| Q9ZQX6 | ETO1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EOL1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35349, jg8758 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13536 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000317 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g119930 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31681, Sbi_jg57622 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25313 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025822 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54247, Sgl59593 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007366, gene:ENSEOMG00000022842 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0025270, CQ.Regalona.r1.5BG0026820 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30026680 |
| Apiaceae | Apium graveolens | 1 | Ag2G02356 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G001440, COCNU_06G015400 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103722732, gene-LOC103724119 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.546.V1.1, AsparagusV1_08.1921.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G10761 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G02680.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028410m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g02600.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g039620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2076 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2185 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g13230 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g15100 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1135 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024710 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1776, BH04.1809, CH04.2036 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_7AG0557820, gene-QOZ80_7BG0588900 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0209580.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_042807, gene-QYE76_066422 |
| Poaceae | Oryza coarctata | 4 | Oco13G002520, Oco14G002740, Oco21G007750, Oco22G008950 |
| Poaceae | Oryza sativa | 2 | LOC_Os07g08120.2, LOC_Os11g37520.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G051300, gene-BS78_K092100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0103178, Pt_Chr0303676, Pt_Chr0700232, Pt_Chr0700421 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr07G015690, Chr16G005370, Chr17G004720, Chr19G017220 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G963700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG077360, gene_TRIDC2BG085900 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G591300.1, TraesCS2B02G592500.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb114430_P002, Zm00001eb200590_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-35668, nbis-gene-43070, nbis-gene-46179 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g18131, Zma_g19007, Zma_g4810 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG01.2841 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g02170 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1029 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11322 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10702 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10357 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.330 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013730 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9958 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19737, nbisL1-mrna-24776 |
| Salicaceae | Populus euphratica | 1 | populus_peu32750 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610789 |
| Solanaceae | Solanum chilense | 1 | SOLCI007322600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031124 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16845_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2638 |
| Zosteraceae | Zostera marina | 1 | Zosma05g28550.v3.1 |