Basic Information
Locus ID:
gene-LOC107031091
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 46079232 | 46095842 | + | gene-LOC107031091 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 105,429.03 Da | 35.76 | 101.27 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 630 | 896 | 7.90074E-90 | - |
| Pfam | PF13855 | Leucine rich repeat | 274 | 333 | 5.4E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 628 | 893 | 5.7E-47 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 34 | 72 | 1.9E-10 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 48 | 393 | 7.31E-53 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 610 | 917 | 2.32E-78 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 595 | 699 | 6.1E-36 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 700 | 913 | 4.0E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 295 | 6.3E-64 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 296 | 388 | 1.5E-11 | IPR032675 |
| SMART | SM00220 | serkin_6 | 624 | 900 | 2.3E-36 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 624 | 896 | 37.431793 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 744 | 756 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 630 | 652 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G06840.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_015087785.1 | probable LRR receptor-like serine/threonine-protein kinase At1g06840 isoform X1 [Solanum pennellii] | 0 |
| C0LGD7 | Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana OX=3702 GN=At1g06840 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology