halophFGD

Basic Information

Locus ID: gene-LOC107031055

Species & Taxonomic ID: Solanum pennellii & 28526

Genome Assembly: GCF_001406875.1

Description: SHR-binding domain of vacuolar-sorting associated protein 13

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	2865702	2938421	+	gene-LOC107031055

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.16	469,338.88 Da	42.37	89.92	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00030	C2	2603	2687	1.54906E-4	-
Pfam	PF16910	Repeating coiled region of VPS13	576	799	4.0E-32	IPR031642
Pfam	PF16908	Vacuolar sorting-associated protein 13, N-terminal	139	383	2.7E-68	IPR031646
Pfam	PF12624	N-terminal region of Chorein or VPS13	2	115	1.5E-30	IPR026854
Pfam	PF06101	Vacuolar protein sorting-associated protein 62	1972	2123	1.2E-14	IPR009291
Pfam	PF06101	Vacuolar protein sorting-associated protein 62	2210	2348	5.1E-10	IPR009291
Pfam	PF06650	SHR-binding domain of vacuolar-sorting associated protein 13	3338	3528	1.8E-11	IPR009543
Gene3D	G3DSA:2.60.40.150	C2 domain	2588	2727	3.2E-5	IPR035892
SMART	SM00233	PH_update	829	939	0.007	IPR001849
SMART	SM00694	dysfc	2930	2970	0.0057	IPR006614

Gene Ontology

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K19525 (vacuolar protein sorting-associated protein 13A/C)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G48090.4	-
RefSeq	XP_015087740.1	uncharacterized protein LOC107031055 isoform X1 [Solanum pennellii]
Swiss-Prot	G0S3B8	Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg12330, jg4926
Aizoaceae	Mesembryanthemum crystallinum	2	gene_2063, gene_23954
Amaranthaceae	Atriplex hortensis	2	Ah004167, Ah027417
Amaranthaceae	Beta vulgaris	2	BVRB_5g105600, BVRB_6g127200
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg13055, Sbi_jg13063, Sbi_jg24399, Sbi_jg52823 ... Sbi_jg8239
Amaranthaceae	Salicornia europaea	3	Seu_jg11784, Seu_jg9052, Seu_jg9057
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00001576, GOSA_00001577, GOSA_00010197, GOSA_00010198 ... GOSA_00010199
Amaranthaceae	Suaeda glauca	6	Sgl33911, Sgl39277, Sgl39278, Sgl39297, Sgl51524, Sgl56809
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000000302, gene:ENSEOMG00000004278 ... gene:ENSEOMG00000021558, gene:ENSEOMG00000022325, gene:ENSEOMG00000023727, gene:ENSEOMG00000024108, gene:ENSEOMG00000025117
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.5AG0003370, CQ.Regalona.r1.5BG0003540 ... CQ.Regalona.r1.5BG0003560, CQ.Regalona.r1.6AG0025300, CQ.Regalona.r1.6BG0026820
Anacardiaceae	Pistacia vera	13	pistato.v30105180, pistato.v30109730, pistato.v30141550 ... pistato.v30141570, pistato.v30158950, pistato.v30232060, pistato.v30232520, pistato.v30268500, pistato.v30268560, pistato.v30268590, pistato.v30292870, pistato.v30292900, pistato.v30292910
Apiaceae	Apium graveolens	3	Ag5G01766, Ag8G01809, Ag9G02671
Arecaceae	Cocos nucifera	4	COCNU_02G015330, COCNU_02G015340, COCNU_04G006790 ... COCNU_07G004500
Arecaceae	Phoenix dactylifera	2	gene-LOC103710761, gene-LOC103722332
Asparagaceae	Asparagus officinalis	4	AsparagusV1_04.3126.V1.1, AsparagusV1_04.3127.V1.1 ... AsparagusV1_06.1654.V1.1, AsparagusV1_06.1655.V1.1
Asteraceae	Flaveria trinervia	5	Ftri11G02195, Ftri11G04819, Ftri11G17855, Ftri12G01658 ... Ftri13G32263
Brassicaceae	Arabidopsis thaliana	2	AT1G48090.1, AT4G17140.3
Brassicaceae	Eutrema salsugineum	2	Thhalv10011170m.g.v1.0, Thhalv10024176m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g35040.v2.2, Sp7g17050.v2.2
Brassicaceae	Brassica nigra	3	BniB04g063010.2N, BniB07g008110.2N, BniB07g022580.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G0781, Ceq09G1400
Casuarinaceae	Casuarina glauca	2	Cgl01G0576, Cgl09G1491
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno05g03120, gene.Cymno05g03130, gene.Cymno15g04190
Dunaliellaceae	Dunaliella salina	4	Dusal.0367s00014.v1.0, Dusal.0595s00004.v1.0 ... Dusal.0595s00006.v1.0, Dusal.0595s00012.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g04270, gene.Thate09g09280
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG04.1352, evm.TU.LG05.1284, evm.TU.LG05.1285 ... evm.TU.LG10.1088, evm.TU.LG11.1133
Plantaginaceae	Plantago ovata	2	Pov_00004103, Pov_00026323
Plumbaginaceae	Limonium bicolor	3	Lb4G25461, Lb5G26647, Lb5G26649
Poaceae	Echinochloa crus-galli	5	AH07.1402, AH07.1403, BH01.3196, BH07.1715, CH01.3434
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_2AG0117140, gene-QOZ80_2AG0130600 ... gene-QOZ80_2AG0130610, gene-QOZ80_2BG0170820, gene-QOZ80_2BG0185880
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0057310.1, HORVU.MOREX.r3.6HG0586400.1
Poaceae	Lolium multiflorum	3	gene-QYE76_012786, gene-QYE76_022497, gene-QYE76_022498
Poaceae	Oryza coarctata	4	Oco03G010000, Oco04G010290, Oco19G010510, Oco20G010330
Poaceae	Oryza sativa	3	LOC_Os02g27110.1, LOC_Os02g27130.1, LOC_Os10g41560.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G281500, gene-BS78_K256200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0503243, Pt_Chr0503285
Poaceae	Sporobolus alterniflorus	6	Chr09G005380, Chr09G005390, Chr09G005400, Chr09G011870 ... Chr13G013420, Chr13G019470
Poaceae	Thinopyrum elongatum	2	Tel1E01G366500, Tel6E01G403600
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG032550, gene_TRIDC1BG037840 ... gene_TRIDC6AG029640, gene_TRIDC6BG036710
Poaceae	Triticum aestivum	6	TraesCS1A02G215400.1, TraesCS1B02G228900.2 ... TraesCS1D02G217900.1, TraesCS6A02G197400.1, TraesCS6B02G224600.1, TraesCS6D02G182900.1
Poaceae	Zea mays	3	Zm00001eb203070_P001, Zm00001eb203090_P001 ... Zm00001eb390790_P001
Poaceae	Zoysia japonica	1	nbis-gene-19044
Poaceae	Zoysia macrostachya	1	Zma_g16310
Portulacaceae	Portulaca oleracea	7	evm.TU.LG04.1034, evm.TU.LG04.3109, evm.TU.LG05.1581 ... evm.TU.LG10.774, evm.TU.LG10.816, evm.TU.LG13.1361, evm.TU.LG17.809
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g06700, gene.Posoc07g05800
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_16_RagTag.406, evm.TU.Scaffold_3_RagTag.693
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-1277, nbisL1-mrna-1278, nbisL1-mrna-22664
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-14556, nbisL1-mrna-18468, nbisL1-mrna-2792
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-20139, nbisL1-mrna-20140, nbisL1-mrna-6375
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000019l.797, evm.TU.utg000022l.247
Rhizophoraceae	Kandelia obovata	1	Maker00014320
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-3388, nbisL1-mrna-5261
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-13126, nbisL1-mrna-13127, nbisL1-mrna-6472
Salicaceae	Populus euphratica	3	populus_peu03097, populus_peu06847, populus_peu20746
Solanaceae	Lycium barbarum	2	gene-LOC132629881, gene-LOC132635217
Solanaceae	Solanum chilense	4	SOLCI005817700, SOLCI005817800, SOLCI006490500 ... SOLCI006490600
Solanaceae	Solanum pennellii	2	gene-LOC107028368, gene-LOC107031055
Tamaricaceae	Reaumuria soongarica	2	gene_14035, gene_8139
Tamaricaceae	Tamarix chinensis	2	TC01G3724, TC10G1108
Zosteraceae	Zostera marina	3	Zosma01g34280.v3.1, Zosma02g14760.v3.1, Zosma03g15620.v3.1