Basic Information
Locus ID:
gene-LOC107030986
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Lateral organ boundaries (LOB) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 3997352 | 4000961 | + | gene-LOC107030986 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 17,334.44 Da | 53.80 | 75.88 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03195 | Lateral organ boundaries (LOB) domain | 9 | 107 | 1.1E-27 | IPR004883 |
| ProSiteProfiles | PS50891 | LOB domain profile. | 8 | 110 | 20.930502 | IPR004883 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 138 | - | - |
| Coils | Coil | Coil | 89 | 116 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G50510.1 | LOB domain-containing protein 28. | 0 |
| RefSeq | XP_027767524.1 | LOB domain-containing protein 24-like [Solanum pennellii] | 0 |
| Q9SCS4 | LOB domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN=LBD28 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag10G01448 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002940, Pov_00036838 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132619749, gene-LOC132619801 |
| Solanaceae | Solanum chilense | 1 | SOLCI000035600 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107025095, gene-LOC107029960, gene-LOC107029962 ... |