Basic Information
Locus ID:
gene-LOC107030885
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Ubiquitin-2 like Rad60 SUMO-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 82810526 | 82813728 | + | gene-LOC107030885 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.75 | 17,918.38 Da | 52.09 | 61.11 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01763 | Ubl_SUMO_like | 77 | 141 | 2.09678E-12 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 81 | 142 | 1.6E-10 | IPR022617 |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 20 | 79 | 3.9E-9 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 9 | 78 | 8.47E-11 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 77 | 148 | 1.79E-13 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 4 | 79 | 4.2E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 80 | 149 | 7.5E-18 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 113 | 147 | 10.614717 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55160.1 | small ubiquitin-like modifier 2. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays. | 0 |
| RefSeq | XP_027767829.1 | uncharacterized protein LOC107030885 [Solanum pennellii] | 0 |
| Q9FLP6 | Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology