Basic Information
Locus ID:
gene-LOC107030865
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RING finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 80602775 | 80607093 | - | gene-LOC107030865 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 55,473.26 Da | 53.19 | 77.61 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 10 | 69 | 1.5E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 108 | 3.5E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 17 | 57 | 3.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 17 | 58 | 10.822189 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 33 | 42 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 280 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015087579.1 | E3 ubiquitin protein ligase DRIP2-like [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 2 | gene-LOC132610900, gene-LOC132610901 |
| Solanaceae | Solanum chilense | 1 | SOLCI001357700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107030463, gene-LOC107030865, gene-LOC114076095 |