Basic Information
Locus ID:
gene-LOC107030047
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 97262522 | 97264271 | - | gene-LOC107030047 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 41,212.46 Da | 45.83 | 82.97 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 318 | 360 | 2.49596E-14 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 23 | 88 | 2.8E-14 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 318 | 360 | 5.9E-12 | IPR001841 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 151 | 220 | 2.7E-6 | IPR032872 |
| SUPERFAMILY | SSF57850 | RING/U-box | 317 | 363 | 2.39E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 281 | 365 | 3.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 318 | 359 | 2.6E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 318 | 360 | 12.25323 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015086939.1 | putative RING-H2 finger protein ATL21A [Solanum pennellii] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology