Basic Information
Locus ID:
gene-LOC107029960
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Lateral organ boundaries (LOB) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 6927810 | 6934776 | + | gene-LOC107029960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.24 | 18,834.39 Da | 45.27 | 68.61 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03195 | Lateral organ boundaries (LOB) domain | 9 | 107 | 2.3E-29 | IPR004883 |
| ProSiteProfiles | PS50891 | LOB domain profile. | 8 | 110 | 20.590546 | IPR004883 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 149 | - | - |
| Coils | Coil | Coil | 89 | 109 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47870.1 | LOB domain-containing protein 27. Required for normal cell division during pollen development. Mutant has extra cell in pollen of vegetative cell identity. Male gametophytic mutation. | 0 |
| RefSeq | XP_015086874.1 | LOB domain-containing protein 24-like [Solanum pennellii] | 0 |
| Q9STS6 | LOB domain-containing protein 27 OS=Arabidopsis thaliana OX=3702 GN=LBD27 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag10G01448 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002940, Pov_00036838 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132619749, gene-LOC132619801 |
| Solanaceae | Solanum chilense | 1 | SOLCI000035600 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107025095, gene-LOC107029960, gene-LOC107029962 ... |