Basic Information
Locus ID:
gene-LOC107029936
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 5627025 | 5628260 | + | gene-LOC107029936 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 47,860.76 Da | 53.61 | 80.32 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 44 | 79 | 4.0E-6 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 255 | 328 | 1.4E-7 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 38 | 147 | 2.22E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 39 | 94 | 8.2E-8 | - |
| SMART | SM00256 | fbox_2 | 46 | 86 | 9.5E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 133 | 379 | 1.6E-20 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 40 | 91 | 11.272594 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015086856.1 | F-box protein At5g49610-like [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 3 | pistato.v30285360, pistato.v30285370, pistato.v30285390 |
| Apiaceae | Apium graveolens | 3 | Ag5G00177, Ag8G00115, Ag8G00116 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1075, evm.TU.LG10.698 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1762 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5563 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1417 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18724 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13722 |
| Solanaceae | Solanum chilense | 3 | SOLCI001505700, SOLCI003744300, SOLCI006902700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107029936, gene-LOC107029937, gene-LOC114076361 |