Basic Information
Locus ID:
gene-LOC107029902
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 1390523 | 1393522 | + | gene-LOC107029902 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 67,184.94 Da | 42.96 | 88.53 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 210 | 472 | 5.4E-92 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 25 | 131 | 4.9E-8 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 19 | 116 | 1.8E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 18 | 147 | 2.1E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 135 | 8.0E-4 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 99 | 11.709058 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 210 | 496 | 92.212868 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 597 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 536 | - | - |
| Coils | Coil | Coil | 536 | 563 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_015086824.1 | BTB/POZ domain-containing protein At5g03250-like [Solanum pennellii] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology