Basic Information
Locus ID:
gene-LOC107029641
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 6026730 | 6035426 | + | gene-LOC107029641 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.94 | 99,841.05 Da | 41.12 | 85.31 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 152 | 185 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 692 | 722 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 107 | 142 | 4.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 374 | 423 | 0.092 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 410 | 724 | 1.59E-41 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 63 | 518 | 7.69E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 463 | 606 | 9.7E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 607 | 792 | 3.0E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 233 | 462 | 2.7E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 28 | 221 | 9.9E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 641 | 680 | 35.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 602 | 638 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 57 | 98 | 440.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 145 | 185 | 0.49 | IPR001680 |
| SMART | SM00320 | WD40_4 | 553 | 592 | 0.0046 | IPR001680 |
| SMART | SM00320 | WD40_4 | 498 | 549 | 0.024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 327 | 361 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 683 | 722 | 7.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 101 | 142 | 1.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 423 | 2.7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 690 | 723 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 410 | 425 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 108 | 151 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 690 | 723 | 8.887423 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 815 | 836 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09080.4 | - | 0 |
| RefSeq | XP_015086560.1 | mitogen-activated protein kinase-binding protein 1 isoform X1 [Solanum pennellii] | 0 |
| Q3U3T8 | WD repeat-containing protein 62 OS=Mus musculus OX=10090 GN=Wdr62 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14799 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285450 |
| Apiaceae | Apium graveolens | 1 | Ag5G02363 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G25194 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G09080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022253m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07530.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g058390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1051 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1076, Cgl08G1077 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1010s00004.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1069 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006461 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09988 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1767 |
| Salicaceae | Populus euphratica | 1 | populus_peu11401 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630690 |
| Solanaceae | Solanum chilense | 1 | SOLCI000172200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029641 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4371 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1795 |