Basic Information
Locus ID:
gene-LOC107029442
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Right handed beta helix region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 88338631 | 88341951 | + | gene-LOC107029442 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 51,510.60 Da | 58.61 | 79.47 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 104 | 421 | 1.8E-85 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 67 | 458 | 5.99E-127 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 64 | 450 | 2.6E-119 | IPR012334 |
| SMART | SM00710 | pbh1 | 284 | 305 | 2100.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 211 | 233 | 7600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 344 | 365 | 3200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 234 | 260 | 400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 315 | 336 | 4.8 | IPR006626 |
| SMART | SM00710 | pbh1 | 261 | 282 | 110.0 | IPR006626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 67 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_015086343.1 | polygalacturonase At1g48100 [Solanum pennellii] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology