Basic Information
Locus ID:
gene-LOC107029351
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 1927027 | 1933419 | - | gene-LOC107029351 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 33,259.48 Da | 62.33 | 49.34 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 213 | 271 | 4.0E-26 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 30 | 111 | 2.4E-19 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 165 | 208 | 6.5E-8 | IPR001841 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 25 | 101 | 1.44E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 102 | 159 | 2.35E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 165 | 214 | 7.36E-10 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 237 | 281 | 9.7E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 230 | 2.8E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 166 | 208 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 101 | 165 | 34.732182 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 23 | 99 | 25.65399 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 166 | 209 | 12.120453 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_015086232.1 | E3 ubiquitin-protein ligase RZFP34 [Solanum pennellii] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology