Basic Information
Locus ID:
gene-LOC107029016
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 62897160 | 62936649 | - | gene-LOC107029016 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 80,883.54 Da | 40.86 | 86.55 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 289 | 425 | 4.17787E-71 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 72 | 288 | 1.06176E-128 | - |
| Pfam | PF00570 | HRDC domain | 611 | 673 | 6.7E-10 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 428 | 484 | 6.8E-11 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 319 | 415 | 1.7E-15 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 92 | 236 | 1.1E-15 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 129 | 430 | 6.39E-53 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 605 | 679 | 3.92E-7 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 289 | 485 | 3.0E-66 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 607 | 676 | 9.5E-13 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 489 | 591 | 4.5E-25 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 47 | 288 | 4.0E-85 | IPR027417 |
| SMART | SM00490 | helicmild6 | 335 | 416 | 8.9E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 86 | 297 | 3.1E-18 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 83 | 516 | 1.7E-158 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 98 | 252 | 17.865341 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 306 | 458 | 20.298431 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 604 | 683 | 14.974091 | IPR002121 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 695 | - | - |
| Coils | Coil | Coil | 600 | 620 | - | - |
| Coils | Coil | Coil | 4 | 38 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_015085783.1 | mediator of RNA polymerase II transcription subunit 34 isoform X1 [Solanum pennellii] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology