Basic Information
Locus ID:
gene-LOC107028898
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 368893 | 381065 | + | gene-LOC107028898 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 121,055.83 Da | 48.95 | 71.81 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 614 | 670 | 1.92011E-30 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 678 | 1039 | 7.6E-34 | IPR001525 |
| Pfam | PF01426 | BAH domain | 357 | 466 | 2.5E-9 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 631 | 671 | 9.3E-11 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 610 | 674 | 5.68E-13 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 505 | 1040 | 3.09E-74 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 833 | 1006 | 5.0E-239 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 507 | 1057 | 5.0E-239 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 290 | 454 | 2.6E-47 | IPR043151 |
| SMART | SM00298 | chromo_7 | 614 | 673 | 5.8E-13 | IPR000953 |
| SMART | SM00439 | BAH_4 | 353 | 469 | 1.6E-21 | IPR001025 |
| PIRSF | PIRSF037404 | DNMT1 | 299 | 447 | 1.9E-7 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 445 | 580 | 9.4E-6 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 104 | 342 | 4000.0 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 664 | 935 | 3.5E-36 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 954 | 1051 | 3.5E-19 | IPR017198 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 353 | 469 | 18.196274 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 615 | 671 | 13.082401 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 505 | 1047 | 47.250164 | IPR001525 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 638 | 658 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 685 | 697 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 506 | 522 | 2.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 774 | 787 | 2.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 728 | 742 | 2.2E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 609 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 274 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_015085626.1 | DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Solanum pennellii] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology