Basic Information
Locus ID:
gene-LOC107028861
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the eukaryotic ribosomal protein eS6 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 909060 | 911907 | - | gene-LOC107028861 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.65 | 28,320.67 Da | 37.32 | 72.49 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01092 | Ribosomal protein S6e | 1 | 128 | 1.2E-55 | IPR001377 |
| Gene3D | G3DSA:1.20.5.2650 | - | 133 | 234 | 5.8E-38 | - |
| SMART | SM01405 | Ribosomal_S6e_2 | 1 | 128 | 1.1E-80 | IPR001377 |
| PIRSF | PIRSF002129 | RPS6e | 1 | 249 | 4.3E-119 | IPR014401 |
| ProSitePatterns | PS00578 | Ribosomal protein S6e signature. | 52 | 63 | - | IPR018282 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 249 | - | - |
| Coils | Coil | Coil | 189 | 216 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko01521 (EGFR tyrosine kinase inhibitor resistance)
map01521 (EGFR tyrosine kinase inhibitor resistance)
ko03010 (Ribosome)
map03010 (Ribosome)
ko04066 (HIF-1 signaling pathway)
map04066 (HIF-1 signaling pathway)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31700.1 | ribosomal protein S6. Encodes a putative ribosomal protein S6 (rps6a). RPS6A and RPS6B are fully redundant and essential during gametogenesis. | 0 |
| RefSeq | XP_004246081.1 | 40S ribosomal protein S6 [Solanum lycopersicum] | 0 |
| Q9M3V8 | Small ribosomal subunit protein eS6 OS=Asparagus officinalis OX=4686 GN=rps6 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology