Basic Information
Locus ID:
gene-LOC107028592
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Nuclear pore complex assembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 66560462 | 66569988 | + | gene-LOC107028592 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 108,267.96 Da | 60.30 | 90.47 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13934 | Nuclear pore complex assembly | 330 | 605 | 1.5E-58 | IPR025151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 116 | 2.2E-5 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 71 | 102 | 8.594486 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 899 | 928 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 899 | 959 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| Coils | Coil | Coil | 538 | 558 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39810.1 | ubiquitin-protein ligases. A novel protein with a RING finger motif near the amino terminus. Negative regulator of cold responses. Functions as an E3 ligase required for the ubiquitination of ICE1. HOS1 physically interacts with ICE1 and mediates the ubiquitination of ICE1 both in vitro and in vivo. Overexpression represses the expression of CBFs and their downstream genes and confers increased sensitivity to freezing stress. | 0 |
| RefSeq | XP_015085207.1 | E3 ubiquitin-protein ligase HOS1 [Solanum pennellii] | 0 |
| Q84JU6 | E3 ubiquitin-protein ligase HOS1 OS=Arabidopsis thaliana OX=3702 GN=HOS1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37302 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2001 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004065 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g104710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24203, Sbi_jg8037 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11999 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003196 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73023, Sgl76563 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004249, gene:ENSEOMG00000020119 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0004210, CQ.Regalona.r1.5BG0004560 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30142240 |
| Apiaceae | Apium graveolens | 1 | Ag10G02692 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G017370 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708293, gene-LOC120104089 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2010.V1.1, AsparagusV1_04.2011.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G02417 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G39810.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016197m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g22100.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g005420.2N, BniB06g005020.2N, BniB08g025610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0728 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0828 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g12400 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0374s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g06990 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11327 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1166 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004162 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08418, Lb2G08419 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3250, BH01.818, CH01.814 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3AG0217130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0340600.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062103 |
| Poaceae | Oryza coarctata | 2 | Oco05G022970, Oco06G023800 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g52700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G088500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107062, Pt_Chr0107540 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G005840, Chr04G028200, Chr07G027070, Chr12G031520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G110300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG038870, gene_TRIDC4BG010430 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G247200.1, TraesCS4B02G067700.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb047720_P001, Zm00001eb056470_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15005, nbis-gene-16082 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2839, Zma_g524 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.889, evm.TU.LG17.882 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g26420 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_16_RagTag.355, evm.TU.Scaffold_16_RagTag.356 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22608 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17800 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20174 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.279 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014274 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3419 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6517 |
| Salicaceae | Populus euphratica | 2 | populus_peu03031, populus_peu33909 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635143 |
| Solanaceae | Solanum chilense | 1 | SOLCI002552800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028592 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14075 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3834 |
| Zosteraceae | Zostera marina | 1 | Zosma02g20310.v3.1 |