Basic Information
Locus ID:
gene-LOC107028458
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 69511991 | 69522872 | - | gene-LOC107028458 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 117,591.58 Da | 50.00 | 76.56 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 913 | 944 | 0.19 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 823 | 860 | 0.029 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 735 | 1050 | 2.6E-49 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 271 | 548 | 4.61E-17 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 712 | 1052 | 4.2E-122 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 276 | 552 | 3.1E-21 | - |
| SMART | SM00320 | WD40_4 | 820 | 860 | 4.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 863 | 902 | 0.04 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1011 | 1050 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 728 | 767 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 955 | 994 | 41.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 205 | 546 | 0.0014 | IPR000719 |
| SMART | SM00320 | WD40_4 | 778 | 817 | 0.27 | IPR001680 |
| SMART | SM00320 | WD40_4 | 906 | 944 | 2.1E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 913 | 946 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 827 | 869 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 784 | 826 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 913 | 946 | 9.731054 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 931 | 945 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 804 | 818 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 847 | 861 | 4.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 804 | 818 | 4.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 931 | 945 | 4.1E-6 | IPR020472 |
| Coils | Coil | Coil | 579 | 606 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_015085020.1 | protein SPA1-RELATED 2 [Solanum pennellii] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology