Basic Information
Locus ID:
gene-LOC107028368
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
SHR-binding domain of vacuolar-sorting associated protein 13
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 65869205 | 65923412 | + | gene-LOC107028368 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 484,056.25 Da | 42.37 | 90.07 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4158 | 4277 | 3.5E-5 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3298 | 3466 | 4.9E-9 | IPR009543 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 373 | 3.3E-66 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1988 | 2124 | 6.8E-9 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2211 | 2352 | 1.9E-9 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 560 | 779 | 1.2E-31 | IPR031642 |
| Pfam | PF00169 | PH domain | 801 | 908 | 2.0E-9 | IPR001849 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 109 | 1.0E-29 | IPR026854 |
| SUPERFAMILY | SSF50729 | PH domain-like | 795 | 911 | 6.72E-12 | - |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2661 | 2759 | 8.67E-5 | IPR035892 |
| Gene3D | G3DSA:2.30.29.30 | - | 795 | 915 | 1.1E-8 | IPR011993 |
| SMART | SM00233 | PH_update | 799 | 911 | 1.5E-9 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 798 | 909 | 11.0088 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1523 | 1545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1523 | 1540 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2179 | 2203 | - | - |
| Coils | Coil | Coil | 111 | 131 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_015084887.1 | uncharacterized protein LOC107028368 [Solanum pennellii] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology