Basic Information
Locus ID:
gene-LOC107028365
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 61227087 | 61232866 | + | gene-LOC107028365 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 35,853.60 Da | 53.53 | 56.37 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 248 | 306 | 3.4E-25 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 200 | 243 | 6.7E-8 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 65 | 146 | 7.3E-19 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 62 | 136 | 3.4E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 200 | 250 | 9.72E-10 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 137 | 194 | 4.45E-18 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 196 | 262 | 6.3E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 272 | 311 | 1.0E-17 | - |
| SMART | SM00184 | ring_2 | 201 | 243 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 201 | 244 | 12.179465 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 58 | 134 | 24.609255 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 136 | 200 | 32.277721 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_015084882.1 | probable E3 ubiquitin-protein ligase RZFP34 [Solanum pennellii] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology