Basic Information
Locus ID:
gene-LOC107028198
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the peptidase A1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 733546 | 734925 | + | gene-LOC107028198 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 47,444.46 Da | 34.08 | 87.12 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05476 | pepsin_A_like_plant | 86 | 431 | 3.17879E-89 | IPR034161 |
| Pfam | PF14541 | Xylanase inhibitor C-terminal | 282 | 426 | 1.0E-26 | IPR032799 |
| Pfam | PF14543 | Xylanase inhibitor N-terminal | 87 | 261 | 6.4E-53 | IPR032861 |
| SUPERFAMILY | SSF50630 | Acid proteases | 79 | 431 | 1.45E-89 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 60 | 259 | 1.8E-55 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 260 | 434 | 6.2E-44 | IPR021109 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 21 | 5.0 | - |
| ProSiteProfiles | PS51767 | Peptidase family A1 domain profile. | 87 | 427 | 42.704285 | IPR033121 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 312 | 323 | - | IPR001969 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 312 | 323 | 7.3E-5 | IPR001461 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 93 | 113 | 7.3E-5 | IPR001461 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 403 | 418 | 7.3E-5 | IPR001461 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G33340.1 | Eukaryotic aspartyl protease family protein. Encodes a protein with aspartic protease activity (also known as aspartate-type endopeptidase activity). Overexpression of the gene was shown to lead to salicylic acid (SA)-mediated disease resistance upon exposure to the pathogen Pseudomonas syringae. Moreover, overexpression of this gene led to the upregulation of two pathogenesis-related genes PR1 and PR2. This upregulation was no longer observed in transgenic lines expressing the bacterial NahG gene encoding a hydroxylase suppressing SA accumulation. | 0 |
| RefSeq | XP_015084728.2 | aspartic proteinase CDR1-like [Solanum pennellii] | 0 |
| Q6XBF8 | Aspartic proteinase CDR1 OS=Arabidopsis thaliana OX=3702 GN=CDR1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology