Basic Information
Locus ID:
gene-LOC107028118
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 58947904 | 58950835 | + | gene-LOC107028118 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 79,845.88 Da | 48.45 | 93.21 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 421 | 700 | 3.36094E-88 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 41 | 75 | 1.5E-4 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 271 | 292 | 1.3 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 104 | 163 | 3.5E-9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 417 | 695 | 1.3E-47 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 59 | 313 | 1.02E-53 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 410 | 697 | 6.34E-71 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 245 | 342 | 4.2E-15 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 495 | 703 | 5.2E-62 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 175 | 244 | 4.9E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 39 | 174 | 1.5E-33 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 392 | 494 | 1.1E-19 | - |
| SMART | SM00220 | serkin_6 | 415 | 705 | 3.1E-30 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 126 | 150 | 63.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 268 | 292 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 244 | 267 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 221 | 243 | 74.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 102 | 125 | 17.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 415 | 705 | 38.152626 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 104 | 125 | 7.33462 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 128 | 150 | 7.057395 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 548 | 560 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 421 | 444 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 105 | 118 | 1.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 268 | 281 | 1.6E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_015084654.2 | LRR receptor-like serine/threonine-protein kinase HSL2 [Solanum pennellii] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology