Basic Information
Locus ID:
gene-LOC107028047
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 1649860 | 1675817 | + | gene-LOC107028047 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 70,417.34 Da | 48.22 | 77.62 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 359 | 638 | 4.31665E-50 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 439 | 473 | 0.0015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 363 | 386 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 395 | 428 | 1.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 518 | 553 | 4.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 603 | 638 | 0.03 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 352 | 638 | 2.56E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 484 | 638 | 6.6E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 295 | 483 | 1.4E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 389 | 428 | 3.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 556 | 595 | 99.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 387 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 515 | 553 | 2.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 433 | 473 | 4.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 599 | 638 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 476 | 512 | 55.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 606 | 638 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 440 | 482 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 396 | 428 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 355 | 396 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 396 | 428 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 606 | 638 | 10.842632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 440 | 477 | 9.941962 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 460 | 474 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_027775196.1 | apoptotic protease-activating factor 1-like isoform X1 [Solanum pennellii] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A3Q7IED2 | WD_REPEATS_REGION domain-containing protein OS=Solanum lycopersicum OX=4081 GN=101254616 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology