Basic Information
Locus ID:
gene-LOC107028030
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 29653997 | 29660047 | + | gene-LOC107028030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 63,070.62 Da | 27.70 | 105.62 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 264 | 366 | 1.80932E-27 | - |
| CDD | cd00030 | C2 | 438 | 534 | 4.44095E-27 | - |
| Pfam | PF00168 | C2 domain | 262 | 366 | 8.5E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 248 | 6.8E-16 | IPR039010 |
| Pfam | PF00168 | C2 domain | 436 | 531 | 5.0E-24 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 392 | 6.55E-30 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 434 | 554 | 7.97E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 255 | 390 | 1.1E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 423 | 554 | 1.1E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 437 | 535 | 2.4E-22 | IPR000008 |
| SMART | SM00239 | C2_3c | 263 | 363 | 1.7E-22 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 415 | 536 | 21.116854 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 29.355055 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 20.300158 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 453 | 465 | 2.3E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 501 | 509 | 2.3E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 479 | 492 | 2.3E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_010324780.1 | synaptotagmin-5-like isoform X1 [Solanum lycopersicum] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology