Basic Information
Locus ID:
gene-LOC107027916
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 70451984 | 70461435 | + | gene-LOC107027916 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 106,402.15 Da | 47.91 | 81.94 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 766 | 920 | 1.78212E-57 | - |
| Pfam | PF06337 | DUSP domain | 43 | 146 | 6.7E-23 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 322 | 919 | 3.3E-84 | IPR001394 |
| SUPERFAMILY | SSF143791 | DUSP-like | 16 | 146 | 8.5E-27 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 319 | 922 | 2.94E-112 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 754 | 931 | 1.4E-57 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 159 | 246 | 3.1E-9 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 7 | 158 | 1.0E-32 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 306 | 531 | 2.9E-69 | - |
| SMART | SM00695 | dusp | 38 | 149 | 6.1E-25 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 321 | 922 | 57.212528 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 19 | 146 | 19.223774 | IPR006615 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 864 | 881 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 322 | 337 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_015084456.1 | ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Solanum pennellii] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology