Basic Information
Locus ID:
gene-LOC107027903
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 58676198 | 58679802 | - | gene-LOC107027903 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 116,600.38 Da | 35.16 | 99.08 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 308 | 367 | 9.3E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 713 | 987 | 1.3E-46 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 53 | 89 | 4.7E-8 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 116 | 175 | 8.9E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 412 | 628 | 2.3E-42 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 702 | 989 | 3.64E-72 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 71 | 396 | 7.48E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 410 | 647 | 1.2E-58 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 51 | 227 | 2.9E-47 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 693 | 790 | 1.6E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 228 | 409 | 2.9E-47 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 791 | 1002 | 3.1E-61 | - |
| SMART | SM00220 | serkin_6 | 711 | 993 | 4.9E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 711 | 993 | 37.106709 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 840 | 852 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 717 | 740 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_015084436.1 | receptor-like protein kinase HSL1 [Solanum pennellii] | 0 |
| P47735 | Receptor-like protein kinase 5 OS=Arabidopsis thaliana OX=3702 GN=RLK5 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology