Basic Information
Locus ID:
gene-LOC107027412
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 5010059 | 5011042 | - | gene-LOC107027412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.24 | 17,678.83 Da | 30.57 | 92.80 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 87 | 148 | 9.68042E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 86 | 148 | 2.3E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 11 | 73 | 9.4E-12 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 5 | 148 | 8.11E-42 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 104 | 157 | 9.7E-15 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 103 | 2.3E-29 | - |
| SMART | SM00054 | efh_1 | 12 | 40 | 0.0089 | IPR002048 |
| SMART | SM00054 | efh_1 | 87 | 115 | 2.7E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 48 | 76 | 0.33 | IPR002048 |
| SMART | SM00054 | efh_1 | 123 | 151 | 6.0E-7 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 83 | 118 | 14.931837 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 44 | 79 | 10.3012 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 119 | 154 | 13.537066 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 8 | 43 | 13.425486 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 96 | 108 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 21 | 33 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 132 | 144 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 57 | 69 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_015084072.1 | probable calcium-binding protein CML15 [Solanum pennellii] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology