Basic Information
Locus ID:
gene-LOC107027259
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 389439 | 392412 | + | gene-LOC107027259 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 50,175.00 Da | 47.86 | 77.31 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 151 | 422 | 5.08588E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 299 | 337 | 0.084 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 251 | 286 | 7.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 387 | 422 | 7.7E-4 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 170 | 226 | 7.4E-5 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 127 | 423 | 6.71E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 78 | 425 | 1.1E-120 | IPR015943 |
| SMART | SM00320 | WD40_4 | 340 | 380 | 70.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 247 | 286 | 3.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 383 | 422 | 1.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 206 | 243 | 0.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 162 | 201 | 8.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 295 | 337 | 0.0034 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 390 | 423 | 11.022865 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 169 | 210 | 9.940341 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 254 | 295 | 14.351543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 254 | 288 | 11.181047 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 390 | 431 | 13.382416 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 409 | 423 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 115 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_015083928.1 | cell division cycle 20.2, cofactor of APC complex-like isoform X1 [Solanum pennellii] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology