Basic Information
Locus ID:
gene-LOC107027240
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Autophagy-related protein 18a-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 884863 | 890612 | + | gene-LOC107027240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 46,825.80 Da | 41.76 | 82.10 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 284 | 314 | 0.0023 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 70 | 317 | 3.83E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 115 | 337 | 3.3E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 62 | 96 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 231 | 271 | 0.022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 274 | 315 | 0.036 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 55 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_015083907.1 | autophagy-related protein 18a-like [Solanum pennellii] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology