Basic Information
Locus ID:
gene-LOC107027199
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 23279403 | 23288029 | + | gene-LOC107027199 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 138,135.42 Da | 42.83 | 78.86 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 615 | 649 | 0.0092 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1053 | 1089 | 7.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 910 | 1234 | 1.33E-31 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 523 | 1094 | 4.94E-43 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 508 | 705 | 1.9E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 892 | 1243 | 5.9E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 729 | 841 | 2.2E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1007 | 1047 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 608 | 649 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 696 | 739 | 46.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1143 | 1182 | 170.0 | IPR001680 |
| SMART | SM00667 | Lish | 3 | 35 | 1.4E-4 | IPR006594 |
| SMART | SM00668 | ctlh | 33 | 91 | 1.3E-7 | IPR006595 |
| SMART | SM00320 | WD40_4 | 499 | 540 | 8.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1050 | 1089 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 561 | 601 | 5.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 742 | 782 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 652 | 693 | 0.25 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 615 | 658 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 3 | 35 | 9.917482 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1057 | 1089 | 11.260138 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1057 | 1089 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 91 | 11.007933 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 636 | 650 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 394 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_027774676.1 | topless-related protein 1-like isoform X1 [Solanum pennellii] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6N2AW73 | WD_REPEATS_REGION domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_022129 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology